PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g00125.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 82aa    MW: 9161.29 Da    PI: 9.7649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g00125.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-121158247
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                              g+WT+ E + + +a + + ++   +W+ +a+ +g g+t++++k ++ k+
  Peaxi162Scf00003g00125.1 11 GSWTAKENKAFEKALAVYDKDtcdRWSNVAKAVG-GKTAEEVKRHYEKL 58
                              89********************************.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-7660IPR009057Homeodomain-like
PROSITE profilePS5129310.62868IPR017884SANT domain
SMARTSM007171.2E-10961IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-141167IPR009057Homeodomain-like
PfamPF002499.4E-101158IPR001005SANT/Myb domain
CDDcd001672.80E-91259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MSSMSSQHGS GSWTAKENKA FEKALAVYDK DTCDRWSNVA KAVGGKTAEE VKRHYEKLVQ  60
DVMYIESGRV PFPKYKNTGG RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-37480178RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479262.14e-50PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS35e-38RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0A0K3482e-37A0A0A0K348_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s03640.11e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-34RAD-like 1